Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001474.1 Corchorus olitorius cultivar O-4 contig01474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.37


Found at i:118 original size:72 final size:63

Alignment explanation


    Indices: 1--160  Score: 185
    Period size: 66  Copynumber: 2.3  Consensus size: 63

                                                                             
          1 TTAGAATCAATTTAGTACTAAAATGATATTAAATTGATTGATTGATTGATTGATTTGAATATCTT
          1 TTAGAATCAA-TTAGTACT--AATGATATT-AA---ATTGATTGATTGATTGATTTGAATA--TT

                *  
         66 GATCCAA
         57 GATCAAA

                                                                             
         73 TTAGAATCAATTAGTACTAATGATATTAATTAATTGATTGATTGATTGATTTGAATATTGATCAA
          1 TTAGAATCAATTAGTACTAATGATATT-A--AATTGATTGATTGATTGATTTGAATATTGATCAA

             
        138 A
         63 A

               *            *     
        139 TTAAAATCAATTAGTATTAATG
          1 TTAGAATCAATTAGTACTAATG

        161 TCATTTAATT


Statistics
Matches: 83,  Mismatches: 3, Indels: 10
        0.86            0.03        0.10

Matches are distributed among these distances:
  66   28  0.34
  68   25  0.30
  69   11  0.13
  71    9  0.11
  72   10  0.12

ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42


Consensus pattern (63 bp):   
TTAGAATCAATTAGTACTAATGATATTAAATTGATTGATTGATTGATTTGAATATTGATCAAA
Done.