genome.fa.s14740.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014740.1 Corchorus olitorius cultivar O-4 contig14773, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  289335

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3386--3593	104	2.0	104	100	0	416	30	11	18	39	1.86
15818--15938	21	6.2	21	72	14	98	5	30	3	60	1.36
15821--15925	36	2.8	39	84	8	144	4	30	3	60	1.35
15820--15935	6	19.3	6	72	0	79	4	30	3	62	1.31
15824--15946	39	3.2	38	85	6	160	4	32	3	59	1.35
24068--24141	37	2.0	37	100	0	148	40	24	13	21	1.89
35829--35908	34	2.4	33	87	8	108	46	7	26	20	1.77
35843--35910	34	2.0	34	100	0	136	44	5	29	20	1.75
48613--48637	2	12.5	2	100	0	50	52	0	48	0	1.00
53537--53617	40	2.0	40	97	0	153	55	0	22	22	1.44
54156--54226	31	2.3	31	100	0	142	50	8	18	22	1.73
60860--60889	11	2.7	11	94	0	51	33	0	16	50	1.46
64430--64507	29	2.7	29	72	9	77	41	29	12	16	1.86
67774--68014	120	2.0	120	98	0	464	37	15	20	26	1.92
73045--73085	18	2.3	18	91	0	64	41	19	9	29	1.83
75329--75394	29	2.4	27	80	9	78	48	13	16	21	1.80
75343--75409	31	2.2	31	92	5	111	50	11	16	20	1.76
75517--75597	31	2.6	31	88	0	117	35	17	8	38	1.80
75574--75653	29	2.7	29	82	3	88	28	16	13	41	1.86
76472--76502	16	1.9	16	100	0	62	32	19	0	48	1.49
76580--76616	19	1.9	19	94	0	65	51	0	0	48	1.00
76570--76616	18	2.6	18	77	9	51	55	0	2	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76647--76757	31	3.6	31	87	2	152	36	13	17	33	1.89
76876--76942	31	2.2	31	92	5	111	20	19	11	47	1.81
109995--110057	31	2.0	32	96	3	119	39	12	31	15	1.85
110260--110323	21	3.2	20	84	8	85	37	12	20	29	1.89
116310--116473	79	2.1	79	93	4	278	46	7	23	22	1.77
129044--129068	6	4.2	6	100	0	50	0	20	0	80	0.72
131436--131464	14	2.1	14	100	0	58	48	13	13	24	1.79
136660--137576	332	2.8	328	80	6	996	36	16	14	32	1.89
137694--138681	492	2.0	493	94	1	1732	34	16	16	32	1.91
138208--139279	333	3.2	333	78	7	1250	34	16	15	33	1.91
139358--141717	332	7.2	331	80	9	2597	34	16	15	33	1.91
139468--141717	658	3.4	657	95	2	3911	35	16	15	33	1.90
143481--145092	656	2.5	657	93	1	2774	35	16	14	33	1.89
148519--148557	17	2.3	17	95	0	69	46	20	5	28	1.72
152633--152672	19	2.0	21	90	9	66	62	27	0	10	1.27
155266--155352	43	2.0	43	100	0	174	18	16	31	34	1.93
155497--155702	102	2.0	102	100	0	412	32	14	24	29	1.95
156460--156508	23	2.0	25	88	7	75	28	6	8	57	1.52
157165--157213	23	2.0	25	88	7	75	28	6	8	57	1.52
156043--158056	705	2.9	669	91	4	3101	38	10	15	35	1.82
158805--159060	132	1.9	133	89	3	401	36	10	3	49	1.54
172866--172938	36	2.0	36	94	0	128	30	6	26	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188308--188384	29	2.6	28	84	11	93	38	7	14	38	1.75
192938--192967	7	4.4	7	95	4	53	86	13	0	0	0.57
202826--203102	36	7.7	36	82	3	270	18	29	20	30	1.97
203333--203461	24	5.5	24	74	15	135	10	18	27	43	1.82
203319--203461	45	3.0	47	83	10	193	10	17	28	43	1.82
209752--209859	51	2.1	51	92	0	180	20	20	20	38	1.93
213338--213371	15	2.2	16	89	5	52	79	0	20	0	0.73
221735--221765	12	2.6	12	94	0	53	16	3	22	58	1.52
246946--246970	10	2.5	10	100	0	50	68	0	32	0	0.90
247099--247156	2	32.5	2	72	27	51	51	1	0	46	1.11
247099--247156	11	5.5	11	71	22	52	51	1	0	46	1.11
247099--247157	13	4.6	13	76	18	61	52	1	0	45	1.10
271849--271881	14	2.4	14	90	5	50	84	0	12	3	0.72
276206--276299	49	1.9	49	100	0	188	35	14	13	36	1.86
286419--286459	21	2.0	21	90	0	64	36	12	19	31	1.89
287893--288125	22	10.5	22	73	10	170	36	9	17	36	1.82
287891--288121	67	3.5	66	78	11	222	35	8	18	37	1.81
288130--288543	22	18.7	21	69	15	153	39	9	16	34	1.81
288318--288414	21	4.4	22	72	20	69	41	8	16	34	1.78
288400--288568	44	3.8	44	74	10	148	42	10	14	33	1.80
288382--288568	88	2.1	88	79	4	198	42	9	14	33	1.78
288649--289212	22	26.0	22	67	12	215	39	10	16	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289173--289220	22	2.2	22	81	7	53	50	8	14	27	1.71

Tables:   1

The End!