genome.fa.s14741.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014741.1 Corchorus olitorius cultivar O-4 contig14774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90907

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280--338	21	3.0	20	82	7	75	27	20	11	40	1.87
280--337	19	2.9	20	84	5	73	27	20	12	39	1.88
1098--1189	41	2.3	40	92	5	150	45	17	0	36	1.49
2171--4325	324	6.6	328	79	8	2063	33	14	15	36	1.89
2171--5561	657	5.2	650	82	6	3606	33	14	16	35	1.89
4632--7470	975	3.0	920	78	9	2307	33	14	16	35	1.90
5569--9105	324	10.8	325	77	9	3092	33	14	17	35	1.90
5676--10159	975	4.6	964	79	9	3810	33	14	16	35	1.89
10139--10602	229	2.0	231	84	3	614	33	15	15	35	1.89
10393--11587	336	3.6	329	80	7	1192	34	14	15	35	1.89
11360--11820	232	2.0	232	87	1	665	33	15	15	34	1.90
12687--13485	327	2.4	330	81	7	907	32	15	16	35	1.90
13484--15428	544	3.6	529	73	13	1404	33	14	15	36	1.88
14852--16640	327	5.5	327	79	8	1511	34	14	15	35	1.89
14856--16639	666	2.7	650	79	7	1886	34	14	15	35	1.89
16675--20188	328	10.9	323	76	10	2753	34	14	15	35	1.88
16679--20200	963	3.6	959	84	7	3969	33	14	16	35	1.88
16673--20094	633	5.3	630	77	10	2338	33	14	16	35	1.89
20972--21135	81	2.0	81	96	0	301	28	14	14	43	1.83
21598--21638	7	5.9	7	97	0	64	48	14	14	21	1.80
31065--31095	2	15.5	2	93	0	53	3	0	48	48	1.17
32708--32738	2	15.5	2	93	0	53	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36664--36689	1	26.0	1	100	0	52	100	0	0	0	0.00
55030--55055	7	3.7	7	100	0	52	88	0	0	11	0.52
56897--56991	46	2.1	46	88	7	140	27	27	12	32	1.93
58466--58551	44	2.0	44	100	0	172	36	37	6	19	1.79
67688--67781	45	2.2	42	84	7	118	36	4	20	39	1.72
70528--70554	6	4.5	6	100	0	54	44	0	37	18	1.50
73361--73398	18	2.1	18	95	0	67	36	44	5	13	1.66
77189--77228	20	2.0	20	90	0	62	27	12	15	45	1.82
87455--87510	19	2.8	20	81	5	78	32	0	16	51	1.44
87461--87510	11	5.2	9	81	18	57	30	0	12	58	1.34

Tables:   1

The End!