Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014742.1 Corchorus olitorius cultivar O-4 contig14775, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60536

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2221--2287
22
3.0
21
78
8
55
37
5
16
40
1.73
2240--2287
22
2.1
22
84
3
60
37
6
18
37
1.76
17833--18117
142
2.0
142
96
0
525
37
13
20
29
1.91
26191--26350
69
2.3
69
95
0
284
34
25
20
20
1.96
27218--27255
20
1.9
20
94
0
67
36
2
10
50
1.51
28861--29028
78
2.2
78
88
0
246
30
15
24
29
1.96
31410--31464
25
2.2
26
90
3
85
54
3
5
36
1.41
31591--31656
27
2.4
27
80
12
73
43
3
9
43
1.51
32797--32852
27
2.1
25
84
15
69
50
1
5
42
1.35
32972--33053
22
3.8
22
81
1
94
39
10
9
40
1.74
32973--33076
43
2.4
44
80
1
120
40
14
9
35
1.79
35936--35970
18
2.1
16
89
10
52
42
0
11
45
1.40
38725--38783
22
2.7
22
77
12
68
77
5
16
0
0.93
44035--44165
18
7.1
18
91
3
208
36
25
16
21
1.93
44035--44176
37
3.9
37
92
3
243
36
25
16
21
1.94
44491--44527
18
2.1
18
100
0
74
32
27
10
29
1.90
44493--44560
21
3.4
19
86
6
75
39
26
8
25
1.85
44689--44715
14
1.9
14
100
0
54
66
0
0
33
0.92
46089--46132
15
2.9
15
86
10
63
50
0
50
0
1.00
49175--49212
15
2.7
15
92
8
62
18
10
21
50
1.76
49439--49503
27
2.4
27
92
0
103
24
1
16
56
1.49
50202--50254
16
3.2
16
81
5
61
5
39
1
52
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54998--55035
2
19.0
2
100
0
76
50
0
0
50
1.00
56733--57211
21
22.8
21
86
2
622
25
12
22
39
1.89
57249--57476
53
4.3
53
86
1
323
42
24
8
24
1.82
57249--57476
105
2.2
106
87
0
323
42
24
8
24
1.82
58087--58153
28
2.4
28
97
0
125
44
16
10
28
1.80
59322--59358
19
2.0
19
94
5
67
29
0
10
59
1.31

Tables:   1

The End!