Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014746.1 Corchorus olitorius cultivar O-4 contig14779, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74185

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1435--1764
178
1.9
178
86
2
475
35
13
16
34
1.88
3134--3163
2
15.0
2
92
0
51
50
0
3
46
1.18
4472--4570
49
2.0
49
96
0
180
37
5
13
44
1.65
7370--7453
18
4.7
18
85
2
107
38
42
13
5
1.68
15106--15194
44
2.0
44
95
0
160
40
19
7
32
1.80
18225--18480
127
2.0
127
99
0
503
44
6
9
39
1.62
19065--19190
43
3.0
43
86
9
186
53
0
3
42
1.16
19065--19185
11
11.4
11
74
7
106
53
0
3
42
1.17
37508--37536
14
2.0
15
93
6
51
24
6
27
41
1.80
40031--40099
2
37.0
2
76
23
62
44
1
2
50
1.25
40711--40736
2
13.0
2
100
0
52
50
0
0
50
1.00
43503--43542
21
1.9
21
94
0
71
32
22
7
37
1.82
45052--45168
58
2.0
58
98
0
225
26
10
36
26
1.88
50192--50260
34
2.0
34
88
5
104
27
7
33
31
1.84
52846--53054
41
5.1
41
91
0
312
20
7
22
49
1.73
52947--53015
21
3.3
21
65
25
56
17
10
23
49
1.77
61213--61261
15
3.2
16
77
8
57
6
14
36
42
1.70
61957--62083
16
7.5
16
73
15
103
10
19
37
33
1.86
61975--62019
23
2.0
23
86
0
63
11
20
37
31
1.87
61998--62084
32
2.7
32
90
0
138
10
20
39
29
1.86
62308--62347
20
2.0
21
85
5
55
60
2
0
37
1.11
64283--64531
44
5.8
43
81
6
265
22
10
26
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64283--64531
86
2.9
86
88
3
378
22
10
26
40
1.86
70542--70591
20
2.5
19
76
20
57
36
2
4
58
1.29
70802--70854
26
2.0
26
100
0
106
41
15
15
28
1.87

Tables:   1

The End!