Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014747.1 Corchorus olitorius cultivar O-4 contig14780, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13389
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:1307 original size:12 final size:12

Alignment explanation


    Indices: 1290--1314  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1280 TTAATTTTAA

                        
       1290 ATTAATTAAATT
          1 ATTAATTAAATT

                        
       1302 ATTAATTAAATT
          1 ATTAATTAAATT

             
       1314 A
          1 A

       1315 AAATATATAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (12 bp):   
ATTAATTAAATT

Found at i:2572 original size:29 final size:29

Alignment explanation


    Indices: 2530--2587  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       2520 TCAAACCTTA

                                         
       2530 GATTCAAACTTGGCGACCTTAAGTAATAT
          1 GATTCAAACTTGGCGACCTTAAGTAATAT

                                         
       2559 GATTCAAACTTGGCGACCTTAAGTAATAT
          1 GATTCAAACTTGGCGACCTTAAGTAATAT

       2588 CAGATCATTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31


Consensus pattern (29 bp):   
GATTCAAACTTGGCGACCTTAAGTAATAT

Found at i:5995 original size:45 final size:45

Alignment explanation


    Indices: 5931--6020  Score: 180
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       5921 ATAAATATGT

                                                         
       5931 GGATTTTACCTTCAAGCGATTTCACTGCAAATCTGCGATTAGTAG
          1 GGATTTTACCTTCAAGCGATTTCACTGCAAATCTGCGATTAGTAG

                                                         
       5976 GGATTTTACCTTCAAGCGATTTCACTGCAAATCTGCGATTAGTAG
          1 GGATTTTACCTTCAAGCGATTTCACTGCAAATCTGCGATTAGTAG

       6021 TCAATTACTA


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   45  1.00

ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33


Consensus pattern (45 bp):   
GGATTTTACCTTCAAGCGATTTCACTGCAAATCTGCGATTAGTAG
Done.