Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014758.1 Corchorus olitorius cultivar O-4 contig14791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5524
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:4100 original size:22 final size:22

Alignment explanation


    Indices: 4068--4109  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       4058 GGCTCGGTGC

                                  
       4068 ATGGCCGAGTCATGACCGGGCT
          1 ATGGCCGAGTCATGACCGGGCT

                  *       *     
       4090 ATGGCCTAGTCATGTCCGGG
          1 ATGGCCGAGTCATGACCGGG

       4110 TGCCACCGAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21


Consensus pattern (22 bp):   
ATGGCCGAGTCATGACCGGGCT
Done.