Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014759.1 Corchorus olitorius cultivar O-4 contig14792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36034

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3224--3274
15
3.5
15
80
15
54
39
5
15
39
1.72
3225--3276
14
3.7
13
84
7
50
42
5
15
36
1.71
3568--3592
12
2.1
12
100
0
50
60
16
0
24
1.36
4284--4308
11
2.3
11
100
0
50
36
0
16
48
1.46
5148--5524
35
10.8
35
83
6
437
27
19
24
28
1.98
5149--5522
105
3.6
105
85
4
481
27
19
24
28
1.99
5762--5887
26
4.7
27
77
7
132
19
15
24
40
1.90
5764--5859
26
3.7
26
83
2
138
19
15
22
41
1.89
5758--5887
53
2.5
53
97
0
242
20
16
23
40
1.91
28773--28824
25
2.1
24
89
3
77
59
3
5
30
1.39
28771--28836
25
2.6
25
80
7
71
59
6
6
28
1.46
29961--30384
213
2.0
214
97
1
805
42
12
9
35
1.76
31704--31732
12
2.3
13
94
5
51
0
37
0
62
0.96
34185--35912
202
8.6
200
88
3
2471
33
13
19
33
1.91
34185--35912
598
2.9
593
88
4
2472
33
13
19
33
1.91
35921--35951
16
1.9
16
93
0
53
45
6
9
38
1.63

Tables:   1

The End!