Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001476.1 Corchorus olitorius cultivar O-4 contig01476, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2067
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29


Found at i:218 original size:21 final size:21

Alignment explanation


    Indices: 194--234  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        184 TAAAAAATCA

                                  
        194 AAAATGTATTT-TTTAAAATAT
          1 AAAAT-TATTTATTTAAAATAT

                                
        215 AAAATTATTTATTTAAAATA
          1 AAAATTATTTATTTAAAATA

        235 AAGATTTTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    5  0.26
  21   14  0.74

ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46


Consensus pattern (21 bp):   
AAAATTATTTATTTAAAATAT
Done.