Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014763.1 Corchorus olitorius cultivar O-4 contig14796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28124

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--46
18
2.4
17
83
4
55
48
26
7
17
1.73
1871--1989
62
1.9
62
96
0
220
42
12
17
27
1.86
8202--8273
27
2.6
27
76
12
67
40
6
0
52
1.28
9319--9366
10
4.8
10
89
0
78
31
18
2
47
1.60
11052--11099
20
2.4
19
80
10
51
45
12
2
39
1.54
13913--13939
5
5.4
5
100
0
54
81
0
0
18
0.69
16724--16778
12
4.8
12
71
8
51
18
43
36
1
1.61
16710--16789
34
2.4
34
97
0
151
16
45
35
3
1.65
16832--16899
14
4.8
14
72
21
52
79
0
7
13
0.93
16883--16926
12
3.7
12
84
0
52
72
0
27
0
0.85
19258--19306
2
25.5
2
83
8
66
44
0
4
51
1.20
22843--22945
41
2.5
41
78
10
111
25
14
15
44
1.84
24210--24241
12
2.7
12
95
0
55
50
31
15
3
1.60
25447--26563
30
37.1
30
90
1
1691
46
18
13
20
1.84
26825--27660
35
23.6
35
82
3
841
41
19
21
18
1.90
26825--27660
71
11.8
71
83
3
853
41
19
21
18
1.90
26847--27660
178
4.6
178
84
3
915
41
19
21
18
1.91
26825--27660
283
2.9
283
89
1
1226
41
19
21
18
1.90

Tables:   1

The End!