Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014764.1 Corchorus olitorius cultivar O-4 contig14797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24277

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
211--272
31
2.0
30
87
9
90
17
4
16
61
1.51
2216--2664
221
2.0
221
96
0
828
29
24
9
36
1.87
4933--4958
2
13.0
2
100
0
52
50
0
0
50
1.00
5742--5790
22
2.2
22
100
0
98
57
6
16
20
1.60
5742--5819
22
3.6
22
87
1
77
50
8
14
26
1.72
5780--5861
43
1.9
43
85
5
112
45
10
9
34
1.72
5780--5861
21
3.9
21
80
6
85
45
10
9
34
1.72
5804--5857
22
2.5
22
87
3
74
44
9
9
37
1.69
7921--7983
33
1.9
33
93
0
108
15
31
38
14
1.88
8003--8053
6
7.6
7
79
14
54
41
0
1
56
1.10
8001--8062
34
1.9
33
83
9
83
45
0
1
53
1.10
8131--8173
21
2.0
21
86
0
59
34
11
39
13
1.82
13340--13388
25
2.0
25
95
0
89
22
12
10
55
1.66
14707--14899
105
1.8
105
97
1
370
48
4
9
37
1.55
15131--15549
161
2.6
161
87
5
535
31
18
20
30
1.96
15186--15549
161
2.2
163
90
3
558
31
18
18
31
1.95
20585--20623
21
1.9
21
84
5
53
23
10
0
66
1.22
21236--21306
37
1.9
37
86
8
101
18
30
12
38
1.88
21329--21478
72
2.1
72
91
0
246
18
16
22
43
1.88

Tables:   1

The End!