Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014765.1 Corchorus olitorius cultivar O-4 contig14798, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3920
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33


Found at i:981 original size:15 final size:15

Alignment explanation


    Indices: 961--993  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

        951 AATTCTCTTT

                           
        961 ATGCCCAAATGTAGA
          1 ATGCCCAAATGTAGA

                           
        976 ATGCCCAAATGTAGA
          1 ATGCCCAAATGTAGA

               
        991 ATG
          1 ATG

        994 AGAATGTAAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21


Consensus pattern (15 bp):   
ATGCCCAAATGTAGA
Done.