Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014769.1 Corchorus olitorius cultivar O-4 contig14802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83278

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
217--321
29
3.6
29
89
2
147
38
8
24
28
1.85
6444--6496
22
2.4
22
96
3
97
30
9
24
35
1.87
6687--6720
17
2.0
17
88
0
50
5
2
20
70
1.21
8394--8433
19
2.1
19
90
0
62
20
12
25
42
1.86
8406--8453
21
2.4
19
86
6
60
25
6
27
41
1.79
11592--11711
3
42.0
3
76
15
112
61
3
1
33
1.22
11668--11694
13
2.1
13
100
0
54
62
7
0
29
1.22
13125--13175
22
2.2
24
83
16
72
41
0
0
58
0.98
13125--13173
25
2.0
25
84
8
64
40
0
0
59
0.98
20074--20122
6
8.2
6
90
0
80
0
18
61
20
1.35
24729--24815
33
2.6
33
92
0
156
3
34
49
12
1.58
24735--24842
39
2.9
39
84
10
156
2
36
47
13
1.58
25309--25376
22
3.1
22
97
0
127
29
10
13
47
1.75
27245--27349
31
3.5
30
71
10
97
37
17
18
27
1.93
27397--27494
31
3.2
31
68
16
87
27
17
19
35
1.94
27397--27554
60
2.6
60
84
0
190
29
14
18
37
1.91
27763--27802
19
2.1
19
95
0
71
22
20
15
42
1.88
28043--28076
2
17.0
2
100
0
68
50
0
0
50
1.00
31123--31311
99
1.9
102
83
6
249
32
23
17
25
1.97
31399--31549
75
2.1
72
91
6
241
35
27
19
17
1.94
33281--33383
24
4.3
24
86
4
127
44
12
22
20
1.85
33292--33410
24
4.9
25
81
8
122
43
10
24
21
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33281--33415
48
2.8
47
82
4
146
43
11
22
21
1.85
33281--33415
72
1.9
72
90
0
216
43
11
22
21
1.85
33802--33850
24
2.1
23
88
11
73
57
0
4
38
1.18
42109--42139
9
3.4
9
95
0
53
38
35
25
0
1.56
42528--42557
3
10.0
3
100
0
60
33
33
33
0
1.58
43403--43504
29
3.6
27
77
7
96
33
5
20
40
1.77
45884--45916
3
11.0
3
93
0
57
36
33
30
0
1.58
49014--49158
32
4.5
32
86
8
138
44
17
15
23
1.86
49013--49158
49
3.0
50
84
9
194
44
17
15
23
1.86
48990--49174
81
2.3
81
96
0
334
43
18
14
23
1.87
49670--49707
6
6.3
6
100
0
76
0
15
0
84
0.63
51322--51353
12
2.7
12
100
0
64
53
31
15
0
1.43
51913--52133
123
1.8
121
84
6
302
53
2
9
34
1.46
54071--54103
12
2.8
12
100
0
66
0
39
0
60
0.97
63994--64139
70
2.1
70
98
0
283
36
5
14
43
1.69
65354--65429
40
1.9
40
83
0
98
34
7
5
52
1.53
65477--65502
2
13.0
2
100
0
52
50
0
0
50
1.00
76718--76753
18
2.0
18
94
0
63
30
27
8
33
1.86
81702--81739
20
1.9
20
100
0
76
31
0
15
52
1.43

Tables:   1

The End!