Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014771.1 Corchorus olitorius cultivar O-4 contig14804, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39194

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2689--2733
12
3.5
13
81
9
56
57
11
0
31
1.33
3640--3664
11
2.3
11
100
0
50
0
48
0
52
1.00
8513--8540
5
5.6
5
100
0
56
60
0
0
39
0.97
11170--11227
19
2.9
19
78
14
64
34
12
22
31
1.91
12449--12495
25
2.0
25
83
8
62
36
10
8
44
1.70
13643--13681
2
19.0
2
89
5
60
46
5
0
48
1.24
13699--13760
31
2.0
31
87
0
88
32
22
3
41
1.70
16807--16838
2
16.5
2
93
6
57
46
0
0
53
1.00
19037--19092
29
1.9
29
85
0
76
30
10
14
44
1.79
19158--19187
15
1.9
16
93
6
53
90
3
6
0
0.56
22846--23136
107
2.8
104
85
4
370
41
7
8
42
1.65
35815--35952
68
2.0
68
98
0
267
23
4
22
49
1.68
35830--35938
34
3.2
34
63
23
84
23
3
22
50
1.65
37226--38985
324
5.4
324
77
10
1557
36
15
14
33
1.88
36250--38883
976
2.7
985
83
6
3042
36
14
14
33
1.88
37886--38814
318
2.9
319
79
10
855
36
15
14
33
1.88

Tables:   1

The End!