Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014774.1 Corchorus olitorius cultivar O-4 contig14807, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118026

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1329--1368
4
10.0
4
89
10
64
77
0
0
22
0.77
1478--1981
252
2.0
251
92
1
848
26
19
17
36
1.94
3580--3720
31
4.5
31
80
0
147
20
23
23
32
1.98
5521--5598
29
2.7
29
83
2
102
17
24
16
41
1.90
5632--5711
33
2.4
33
97
0
151
28
38
16
16
1.90
5736--5795
29
2.0
30
87
3
86
41
10
23
25
1.85
6238--6965
274
2.7
274
80
7
786
32
13
17
37
1.88
9761--9788
7
4.0
7
100
0
56
42
42
0
14
1.45
10200--10233
14
2.4
14
95
0
59
23
8
0
67
1.18
10261--10291
15
2.1
15
100
0
62
19
6
12
61
1.53
11964--12003
20
2.0
20
100
0
80
25
25
15
35
1.94
13286--13391
42
2.5
42
85
4
131
39
8
27
24
1.84
13358--13422
33
2.0
33
93
0
112
40
10
23
26
1.87
53780--53822
20
2.2
20
100
0
86
69
4
4
20
1.25
59182--59226
23
2.0
23
95
0
81
42
24
2
31
1.67
59267--59329
21
3.1
20
82
11
83
38
12
20
28
1.89
62561--62639
39
2.0
39
100
0
158
17
24
37
20
1.93
64415--64446
7
4.7
7
96
3
57
90
0
9
0
0.45
65544--65625
19
4.5
19
72
22
61
51
1
1
46
1.16
65542--65624
11
7.2
13
70
27
55
51
1
1
45
1.16
76985--77064
33
2.3
33
80
18
92
7
35
16
41
1.76
84217--84258
6
6.7
6
89
8
57
40
11
0
47
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84220--84258
13
2.9
13
96
3
69
38
12
0
48
1.42
84475--84555
39
2.0
40
90
2
128
50
7
4
37
1.52
84546--84592
25
1.9
24
95
4
85
29
6
8
55
1.55
85572--85641
36
1.9
36
88
0
104
58
8
11
21
1.59
88181--88208
14
2.0
14
100
0
56
7
14
7
71
1.29
88525--88578
27
2.0
27
100
0
108
37
7
22
33
1.82
92828--92857
15
1.9
16
93
6
53
53
3
0
43
1.17
93168--93227
21
2.8
22
78
12
63
33
11
10
45
1.74
95033--95097
3
22.3
3
93
6
116
69
0
0
30
0.89
95091--95125
13
2.7
13
90
0
52
60
0
14
25
1.35
98108--98200
46
2.0
46
100
0
186
22
25
17
34
1.96
99078--99102
12
2.1
12
100
0
50
32
8
44
16
1.76
103756--104076
160
2.0
160
98
0
615
35
13
15
35
1.86
107481--107545
31
2.1
31
100
0
130
38
15
9
36
1.79
107832--107875
18
2.4
18
76
0
52
45
22
6
25
1.77
111932--111990
31
1.9
31
82
6
75
11
18
37
32
1.87
116299--116641
141
2.4
142
85
4
446
34
17
23
24
1.96

Tables:   1

The End!