Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014775.1 Corchorus olitorius cultivar O-4 contig14808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59054

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--36
2
16.5
2
100
0
66
48
0
0
51
1.00
264--530
107
2.6
106
86
5
368
41
8
8
41
1.67
241--530
103
2.8
103
84
7
372
41
9
7
41
1.66
1010--1049
20
2.0
20
100
0
80
35
25
20
20
1.96
3648--3735
22
4.0
22
98
0
167
53
9
10
27
1.65
3650--3731
11
7.5
11
68
28
59
53
9
9
26
1.65
9043--9080
20
1.9
20
88
0
58
39
7
23
28
1.83
11847--11939
16
5.8
16
77
9
91
41
38
12
6
1.69
13589--13624
17
2.2
17
90
9
58
36
38
16
8
1.79
15840--16226
141
2.7
141
82
3
460
35
15
24
24
1.94
18538--18581
5
9.2
5
85
9
65
20
18
0
61
1.35
18543--18586
23
1.9
23
95
0
79
18
15
0
65
1.27
24898--24971
5
16.0
5
81
16
97
22
20
0
56
1.42
24906--24971
18
3.4
18
85
10
78
24
19
0
56
1.43
24898--24978
26
3.0
28
87
10
125
23
20
0
55
1.43
31740--31773
2
17.0
2
100
0
68
50
0
0
50
1.00
33345--33373
2
14.5
2
100
0
58
48
0
0
51
1.00
34403--34432
15
2.0
15
93
0
51
43
16
13
26
1.85
34729--34913
93
2.0
93
90
2
291
32
12
2
52
1.52
39291--39379
40
2.2
40
82
10
99
48
11
17
22
1.79
39325--39379
20
2.8
20
97
0
101
49
10
18
21
1.78
39427--39481
22
2.5
22
91
2
85
38
7
12
41
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43209--43233
11
2.3
11
100
0
50
56
0
16
28
1.41
50641--50799
79
2.0
79
96
0
291
38
13
10
38
1.78
50755--50891
68
2.0
68
100
0
274
40
13
10
35
1.78
52342--52408
21
3.2
21
64
16
57
50
14
5
28
1.66
52330--52409
42
1.9
42
97
0
151
47
16
6
30
1.71
52475--52592
57
2.0
58
88
6
177
38
2
24
33
1.69

Tables:   1

The End!