Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014777.1 Corchorus olitorius cultivar O-4 contig14810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95607

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11049--11097
24
2.0
24
88
0
71
44
4
10
40
1.57
11449--11485
14
2.6
14
91
0
56
51
27
5
16
1.66
14779--14838
30
2.0
30
86
0
84
26
35
10
28
1.89
26919--26964
21
2.2
21
92
0
74
39
6
32
21
1.79
43277--43348
28
2.6
28
91
2
119
36
22
6
34
1.81
44592--44621
15
2.0
15
93
0
51
20
10
20
50
1.76
44597--44648
15
3.5
15
78
5
52
21
17
21
40
1.91
44678--44894
24
9.0
24
90
0
164
19
33
16
30
1.94
44680--44969
48
6.0
48
86
1
285
18
32
17
31
1.94
44733--44976
24
10.2
24
90
0
353
17
32
18
32
1.94
51985--52018
16
2.2
16
89
5
52
79
0
20
0
0.73
51985--52026
15
2.8
16
86
13
54
76
2
21
0
0.90
52265--52289
2
12.5
2
100
0
50
48
0
0
52
1.00
52610--52640
10
3.1
10
95
0
53
58
0
41
0
0.98
54396--54494
29
3.4
28
66
16
74
34
17
19
29
1.94
54389--54528
60
2.3
60
91
0
226
36
18
18
26
1.94
54572--54735
31
5.4
31
63
19
94
28
18
18
34
1.95
54572--54731
60
2.7
60
90
0
248
28
18
18
35
1.94
79579--79636
19
3.0
19
73
11
55
32
20
6
39
1.79
86385--86412
11
2.5
11
100
0
56
46
0
7
46
1.30
86937--86968
10
3.2
10
100
0
64
9
31
28
31
1.88
89766--89825
24
2.5
24
97
0
111
30
13
28
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93233--93291
26
2.3
25
88
2
82
57
1
3
37
1.25

Tables:   1

The End!