Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014779.1 Corchorus olitorius cultivar O-4 contig14812, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203591

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--409
198
2.0
197
97
1
753
25
17
19
36
1.94
1351--1409
31
1.9
31
92
0
100
27
25
15
32
1.95
6037--6091
29
1.9
28
92
3
92
29
34
3
32
1.75
7395--7475
41
2.0
41
92
0
135
34
16
17
32
1.92
12221--12246
2
13.0
2
100
0
52
50
0
0
50
1.00
13432--13469
19
2.0
20
89
5
60
52
15
0
31
1.43
14794--14886
48
1.9
48
97
0
177
26
6
35
31
1.82
26159--27024
332
2.6
336
79
7
883
36
16
13
33
1.88
41301--41380
39
2.1
39
100
0
160
47
17
10
25
1.78
42471--42503
8
4.2
8
92
7
59
0
12
0
87
0.53
42471--42503
15
2.1
16
94
5
59
0
12
0
87
0.53
42477--42510
15
2.3
15
89
0
50
0
14
2
82
0.79
44344--44412
23
3.1
23
62
26
58
49
18
17
14
1.80
44326--44412
43
2.0
43
100
0
174
47
18
18
16
1.83
52912--52955
22
2.0
22
95
0
79
18
25
22
34
1.96
53627--53718
29
3.1
28
65
11
67
39
16
14
30
1.88
53585--53743
60
2.7
60
84
2
194
39
14
16
29
1.88
53836--53928
29
3.1
29
67
11
80
31
15
18
35
1.91
53788--53949
60
2.7
60
87
5
231
28
17
18
35
1.93
59603--59652
25
2.0
25
100
0
100
52
4
4
40
1.39
59851--59887
10
3.8
10
92
3
58
48
0
16
35
1.46
61864--61924
29
2.1
30
87
3
88
42
3
3
50
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70191--70289
48
2.1
48
100
0
198
41
23
6
29
1.78
83307--83483
98
1.8
98
94
0
309
33
13
13
38
1.84
84681--84724
22
2.0
23
86
8
65
52
11
6
29
1.63
88943--89059
31
3.8
30
75
15
123
10
19
13
56
1.66
100754--100791
18
2.1
18
100
0
76
26
15
15
42
1.87
102099--102196
47
2.1
47
94
0
169
37
25
10
26
1.88
122041--122086
5
9.6
5
79
9
51
80
15
2
2
0.91
132205--132230
7
3.7
7
100
0
52
88
0
0
11
0.52
153796--153847
25
2.0
26
81
7
61
28
11
5
53
1.60
154631--154699
25
2.8
25
93
0
120
28
17
44
8
1.78
157501--157543
22
1.9
23
95
4
79
37
13
23
25
1.92
160422--160517
30
3.2
30
88
5
115
36
28
7
28
1.84
172609--172682
28
2.5
28
78
12
78
33
13
9
43
1.76
174529--177235
652
4.2
629
75
10
1948
33
14
15
36
1.88
179078--179110
17
1.9
17
93
0
57
42
3
15
39
1.62
179010--179172
85
1.9
83
92
2
272
31
14
18
34
1.91
179244--179469
113
2.0
113
100
0
452
33
27
11
27
1.91
181893--181932
21
2.0
21
95
5
73
37
17
5
40
1.72
183555--183602
21
2.3
21
81
0
60
31
22
8
37
1.84
192486--192519
2
17.0
2
100
0
68
50
0
0
50
1.00
193614--193675
30
2.1
30
93
0
106
24
24
4
46
1.71
195634--195696
5
12.8
5
98
1
119
17
0
0
82
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
202440--202493
18
3.0
18
94
0
90
5
42
0
51
1.25

Tables:   1

The End!