Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014781.1 Corchorus olitorius cultivar O-4 contig14814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61809

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
866--909
20
2.2
20
84
11
56
27
9
9
54
1.62
1004--1030
11
2.5
11
100
0
54
7
18
14
59
1.58
1188--1249
22
2.8
22
85
0
79
35
9
11
43
1.73
1263--1384
23
5.5
22
78
9
97
36
14
8
40
1.76
1263--1341
23
3.5
23
86
5
99
41
12
5
40
1.65
4800--4836
2
18.5
2
88
0
56
51
0
5
43
1.24
6063--6114
27
1.9
27
88
0
77
32
3
11
51
1.56
17414--17455
15
2.9
15
85
3
59
71
0
28
0
0.86
17414--17464
18
2.8
19
80
17
63
70
0
29
0
0.87
20989--21018
15
2.0
15
93
0
51
56
0
0
43
0.99
29891--30044
31
5.0
31
86
0
218
32
26
24
16
1.96
32169--32209
2
20.5
2
94
0
73
48
0
48
2
1.14
33522--33547
11
2.4
11
100
0
52
19
26
7
46
1.77
45206--45235
6
5.0
6
91
0
51
0
16
63
20
1.31
46517--46717
41
4.9
41
83
5
226
29
13
20
35
1.92
46544--46717
85
2.1
82
85
3
231
30
14
18
36
1.91
47578--47805
75
3.0
75
84
4
296
17
21
10
51
1.73
50191--50282
41
2.2
43
88
5
134
31
15
17
35
1.91

Tables:   1

The End!