Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014785.1 Corchorus olitorius cultivar O-4 contig14818, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3403
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31


Found at i:3215 original size:33 final size:33

Alignment explanation


    Indices: 3107--3251  Score: 125
    Period size: 33  Copynumber: 4.4  Consensus size: 33

       3097 AAGAGTAATT

                  *        *         *        
       3107 CTAAATTTGTTTTAGATGTTGTTTGCGAT-AATA
          1 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAA-A

                 *  **                      * 
       3140 CTAAACCTAATTT-GAGTGTTGTTTGTGATGACA
          1 CTAAATCTGTTTTAG-GTGTTGTTTGTGATGAAA

                                             
       3173 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA
          1 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA

                          * *  * **           
       3206 C-AAATTCTGTTTTTGATGCTAATTGTGATGAAA
          1 CTAAA-TCTGTTTTAGGTGTTGTTTGTGATGAAA

            *            
       3239 ATAAATCTGTTTT
          1 CTAAATCTGTTTT

       3252 GGTTGATCAT


Statistics
Matches: 90,  Mismatches: 17, Indels: 10
        0.77            0.15        0.09

Matches are distributed among these distances:
  32    4  0.04
  33   81  0.90
  34    5  0.06

ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45


Consensus pattern (33 bp):   
CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA
Done.