Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014788.1 Corchorus olitorius cultivar O-4 contig14821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44245

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41--67
3
9.0
3
100
0
54
66
0
33
0
0.92
2329--2357
14
2.0
15
93
6
51
27
6
10
55
1.59
5449--5474
13
2.0
13
100
0
52
69
23
0
7
1.14
26742--27038
106
2.8
103
84
5
364
43
7
8
40
1.63
28036--28062
2
13.5
2
100
0
54
51
0
0
48
1.00
29379--29800
42
10.0
42
85
2
409
16
6
46
30
1.72
29379--29800
84
5.0
84
90
0
461
16
6
46
30
1.72
30576--30614
2
19.5
2
100
0
78
51
0
0
48
1.00
33582--33616
15
2.2
16
90
5
54
77
0
0
22
0.78
33581--33616
14
2.4
14
90
9
54
75
0
0
25
0.81
37282--37316
5
7.2
5
90
3
54
0
20
0
80
0.72
38816--38897
41
2.0
41
88
4
121
42
18
10
28
1.84

Tables:   1

The End!