genome.fa.s14790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014790.1 Corchorus olitorius cultivar O-4 contig14823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31092

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2056--2086	2	15.5	2	100	0	62	51	0	0	48	1.00
2290--2330	20	2.0	21	86	9	59	51	9	14	24	1.72
2378--2438	21	2.9	21	82	4	68	37	6	14	40	1.72
2766--2796	2	16.0	2	93	6	55	48	0	0	51	1.00
6895--7013	46	3.1	34	72	23	103	43	26	8	21	1.80
6913--7013	46	2.2	46	82	3	114	46	27	7	17	1.76
7160--7252	42	2.2	42	88	1	132	35	31	11	21	1.90
10466--10589	44	2.7	45	91	3	187	38	22	26	12	1.89
13023--13106	35	2.3	35	87	6	114	44	27	9	19	1.81
13232--13324	42	2.2	42	86	1	123	35	30	11	22	1.90
14310--14360	22	2.2	24	83	16	72	41	0	0	58	0.98
14310--14358	25	2.0	25	84	8	64	40	0	0	59	0.98
17157--17209	21	2.5	21	90	0	79	45	32	5	16	1.71
17362--17570	59	3.5	59	89	0	301	25	20	22	31	1.98
18036--18101	28	2.4	28	89	0	96	22	27	18	31	1.97
18048--18104	28	2.0	28	96	0	105	24	24	19	31	1.98
20951--21003	28	1.9	28	85	11	74	58	24	1	15	1.47
21757--21829	30	2.4	30	97	0	137	35	0	34	30	1.58
22547--22599	21	2.5	21	90	0	79	45	32	5	16	1.71
22759--22961	59	3.4	59	88	0	298	26	19	22	32	1.97
23426--23493	28	2.4	28	90	0	109	17	20	26	35	1.95
23619--23660	21	2.0	20	90	4	66	23	11	2	61	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29072--29109	11	3.5	11	85	10	51	57	2	0	39	1.12

Tables:   1

The End!