Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014791.1 Corchorus olitorius cultivar O-4 contig14824, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25266

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
592--636
17
2.6
17
85
0
63
31
8
2
57
1.41
6245--6288
17
2.6
17
85
0
61
31
9
2
56
1.43
6344--6372
2
14.5
2
100
0
58
48
0
0
51
1.00
12222--12270
25
2.1
25
85
11
68
63
2
4
30
1.24
12231--12264
17
1.9
18
94
5
61
64
2
2
29
1.22
12231--12270
17
2.3
16
87
12
53
65
2
2
30
1.19
12336--12368
17
1.9
17
93
0
57
42
0
0
57
0.98
15857--16008
79
1.9
79
90
0
241
33
15
1
49
1.56
16060--16121
31
2.0
31
90
0
97
27
19
8
45
1.78
16417--16657
119
2.0
122
90
4
382
37
10
1
49
1.48
17347--17384
17
2.3
16
86
13
51
34
5
0
60
1.19
17337--17392
25
2.3
24
84
6
69
33
3
1
60
1.24
17930--17976
22
2.1
23
84
4
60
23
14
17
44
1.85
20355--20405
16
2.9
18
78
21
72
29
11
25
33
1.91
21914--21976
27
2.4
26
86
7
83
14
15
41
28
1.87
24609--24682
29
2.5
30
88
4
105
24
18
13
43
1.86
24929--24971
15
2.8
16
82
13
54
0
23
0
76
0.78
24929--24972
22
2.0
22
82
8
54
0
25
0
75
0.81

Tables:   1

The End!