Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014793.1 Corchorus olitorius cultivar O-4 contig14826, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153198

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
227--480
121
2.0
127
87
7
376
51
1
9
37
1.47
583--669
34
2.5
35
88
3
149
25
3
20
50
1.64
10420--10450
7
4.4
7
95
0
53
0
16
0
83
0.64
20909--20938
2
15.5
2
93
6
53
53
0
0
46
1.00
22264--22291
12
2.3
12
100
0
56
85
0
0
14
0.59
22327--22356
10
3.0
10
95
0
51
40
3
30
26
1.72
23253--23304
16
3.4
16
69
15
56
19
25
13
42
1.87
28950--28988
2
19.5
2
100
0
78
51
0
0
48
1.00
29584--30030
44
10.3
42
69
13
178
38
16
8
36
1.79
29847--29996
66
2.3
65
80
11
164
38
18
6
37
1.77
29584--30030
22
20.6
21
69
16
132
38
16
8
36
1.79
30129--30161
16
1.9
17
88
11
50
3
9
18
69
1.28
31299--31350
21
2.4
21
81
9
52
38
17
3
40
1.68
31307--31350
21
2.0
22
86
4
63
38
15
4
40
1.68
31596--31774
22
8.2
22
68
11
109
36
17
11
35
1.85
36423--36487
32
2.0
33
87
6
96
46
16
10
26
1.80
42249--42288
15
2.6
16
88
4
55
15
10
12
62
1.54
43312--43362
22
2.2
24
83
16
72
41
0
0
58
0.98
43312--43360
25
2.0
25
84
8
64
40
0
0
59
0.98
44825--44901
2
39.5
2
74
14
63
45
2
6
45
1.43
45117--45210
45
2.2
43
88
7
138
35
22
7
35
1.82
46817--46870
2
27.5
2
85
10
76
48
0
3
48
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50405--50432
14
2.0
14
100
0
56
57
7
7
28
1.52
54716--54776
9
6.8
9
72
7
52
55
6
0
37
1.26
68456--68500
21
2.1
21
83
0
54
42
48
0
8
1.34
70420--70478
29
2.0
30
86
3
84
35
5
18
40
1.73
73496--73774
140
2.0
139
90
0
441
24
17
15
42
1.88
75876--75910
18
1.9
18
88
11
54
54
14
2
28
1.54
76109--76162
24
2.4
22
84
12
65
22
7
59
11
1.56
76160--76205
21
2.1
22
84
11
60
15
4
58
21
1.54
76201--76241
12
3.4
12
86
0
55
17
7
60
14
1.55
96032--96061
1
30.0
1
100
0
60
100
0
0
0
0.00
106201--106227
13
2.1
13
100
0
54
29
22
0
48
1.51
106820--106865
22
2.0
23
91
4
76
19
28
10
41
1.85
131856--131912
24
2.4
24
100
0
114
0
24
24
50
1.49
136011--136041
12
2.6
12
100
0
62
51
32
16
0
1.44
136082--136141
30
2.0
30
90
6
95
41
8
18
31
1.80
137465--137517
22
2.4
22
78
12
56
20
5
9
64
1.44
144634--144672
20
1.9
20
89
5
60
71
2
5
20
1.17
144805--144849
7
6.6
7
79
5
56
0
4
13
82
0.82
144805--144868
20
3.0
20
80
8
56
4
4
10
79
1.02
144804--144849
13
3.4
14
79
8
51
0
6
13
80
0.89
147034--147099
28
2.4
28
100
0
132
30
12
4
53
1.58
147322--147375
22
2.3
24
81
12
60
24
22
5
48
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152743--152889
59
2.3
64
89
9
223
31
17
16
35
1.92
152776--152888
31
3.7
30
85
14
151
32
15
16
35
1.90

Tables:   1

The End!