Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014794.1 Corchorus olitorius cultivar O-4 contig14827, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41165

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
168--226
22
2.5
24
78
15
61
23
22
5
49
1.70
267--294
2
14.0
2
100
0
56
50
0
0
50
1.00
1801--1848
22
2.2
22
88
7
71
27
16
10
45
1.80
1952--2036
45
1.9
44
80
7
100
36
15
12
35
1.86
1984--2036
22
2.4
23
78
9
65
37
15
13
33
1.86
2058--2113
22
2.5
22
79
2
58
39
8
12
39
1.75
2080--2349
22
12.5
21
71
14
115
36
15
9
38
1.79
2078--2349
44
6.3
43
75
12
211
36
15
9
38
1.80
2272--2365
22
4.4
21
74
10
66
37
13
8
40
1.76
2474--2640
66
2.5
65
79
2
174
35
12
9
42
1.76
2447--2890
22
20.0
23
69
14
141
34
14
10
40
1.80
2766--3124
66
5.2
66
70
12
229
36
17
9
36
1.82
2929--3049
22
5.4
22
75
9
75
38
15
7
38
1.76
2972--3091
22
5.5
21
74
12
91
34
15
10
40
1.81
2896--3077
68
2.7
65
80
5
175
37
16
8
36
1.80
6201--6327
35
3.4
35
68
17
101
38
3
14
43
1.64
20390--20448
30
2.0
28
90
6
91
27
6
23
42
1.79
28663--28740
38
2.0
39
97
2
149
25
25
17
30
1.97
33261--33290
8
3.8
8
95
0
51
36
0
33
30
1.58
34116--34141
6
4.3
6
100
0
52
50
15
34
0
1.45
35365--35401
17
2.1
18
85
14
51
67
2
5
24
1.25
37344--37385
21
2.0
21
86
9
59
16
0
35
47
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37924--37962
7
5.6
7
96
0
60
41
0
23
35
1.55
38238--38279
21
2.0
21
86
9
59
16
0
35
47
1.47
38949--39365
22
19.1
22
69
16
192
37
17
9
35
1.82
39047--39153
46
2.4
44
84
6
126
39
13
14
32
1.85
39446--39517
22
3.3
21
82
3
72
38
13
6
40
1.72
39570--39653
22
3.8
22
74
3
71
34
20
8
36
1.83
39750--40109
22
15.9
21
71
15
195
36
16
9
37
1.80
39751--39988
44
5.2
44
78
12
230
35
15
9
39
1.80
39844--40021
73
2.5
72
83
7
202
35
14
10
39
1.80
40097--40131
18
1.9
18
88
11
54
40
22
8
28
1.84

Tables:   1

The End!