Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014797.1 Corchorus olitorius cultivar O-4 contig14830, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41955

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5508--5538
14
2.1
15
94
5
55
48
0
51
0
1.00
6684--6745
25
2.6
24
87
5
81
59
4
6
29
1.43
15805--15893
32
2.8
31
76
6
97
49
15
11
23
1.77
15933--15961
15
1.9
15
100
0
58
44
27
6
20
1.77
16220--16345
32
3.9
32
81
4
128
50
15
11
23
1.76
21331--21359
13
2.1
14
93
6
51
44
0
0
55
0.99
26490--26878
90
4.2
90
83
2
436
31
18
17
31
1.94
26555--26878
30
10.7
30
89
0
423
31
19
18
30
1.96
28472--28553
28
3.0
28
65
19
66
45
3
7
43
1.49
29676--29741
29
2.3
29
89
2
98
25
16
12
45
1.82
29737--29984
107
2.3
106
86
4
347
41
9
7
40
1.66
31621--32112
245
2.0
245
98
0
948
25
22
12
39
1.89
32058--32172
56
2.0
57
94
1
205
32
25
1
40
1.66
33680--33806
54
2.4
54
89
1
193
29
8
10
51
1.65
35335--35389
13
4.5
12
78
17
51
58
10
1
29
1.43
41311--41365
13
4.5
12
78
17
51
58
10
1
29
1.43
41477--41690
107
2.0
107
100
0
428
49
21
11
17
1.78

Tables:   1

The End!