Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014799.1 Corchorus olitorius cultivar O-4 contig14832, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34878

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
220--260
22
1.9
22
85
5
57
24
12
12
51
1.73
363--451
31
2.8
32
88
6
128
22
12
16
48
1.80
322--451
63
2.1
63
80
2
145
19
10
18
51
1.75
1172--1260
32
2.8
31
76
6
97
49
15
11
23
1.77
4394--4430
2
18.5
2
100
0
74
51
0
0
48
1.00
4661--4690
5
6.2
5
92
7
53
0
16
0
83
0.65
5119--5220
49
2.2
49
87
8
151
31
7
5
54
1.53
20683--20760
38
2.0
39
92
2
131
15
6
35
42
1.73
24485--24535
24
2.1
24
100
0
102
60
7
7
23
1.50

Tables:   1

The End!