Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014800.1 Corchorus olitorius cultivar O-4 contig14833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76464

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3210--3249
21
2.0
20
85
5
53
35
17
10
37
1.83
6719--6768
16
3.1
16
74
23
50
0
12
16
72
1.13
12366--12429
21
3.2
20
82
8
76
35
12
17
34
1.87
12372--12430
19
3.0
20
85
5
75
35
11
16
35
1.86
13787--13865
39
2.0
40
95
2
142
29
5
40
25
1.77
15496--15521
5
5.2
5
100
0
52
19
42
19
19
1.90
17260--17287
6
4.7
6
100
0
56
71
0
0
28
0.86
20496--20520
4
6.2
4
100
0
50
76
0
24
0
0.80
22856--22881
9
2.9
9
100
0
52
69
0
30
0
0.89
24031--24360
164
2.0
165
91
1
536
33
12
23
30
1.92
30999--31046
21
2.3
20
82
3
60
12
50
0
37
1.41
40299--40355
25
2.4
24
88
5
80
59
3
5
31
1.36
41107--41140
15
2.3
15
90
5
52
64
0
11
23
1.26
44471--44509
19
2.1
19
86
13
55
12
15
5
66
1.41
45259--45297
20
2.0
20
89
0
60
17
7
7
66
1.40
50618--50645
10
2.8
10
100
0
56
75
7
7
10
1.20
54113--54156
12
3.2
15
69
24
51
81
11
4
2
0.92
54116--54155
20
2.0
21
85
5
55
85
7
5
2
0.83
58059--58175
60
2.1
58
87
9
170
30
8
14
46
1.75
59433--59463
13
2.3
14
94
5
55
19
0
3
77
0.90
59753--59777
7
3.6
7
100
0
50
32
32
0
36
1.58
67778--68601
37
22.1
37
88
5
1171
34
19
16
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67778--68601
113
7.4
110
91
3
1165
34
19
16
28
1.94
67778--68601
73
11.1
73
90
3
1118
34
19
16
28
1.94

Tables:   1

The End!