Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014801.1 Corchorus olitorius cultivar O-4 contig14834, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3671
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32


Found at i:490 original size:21 final size:21

Alignment explanation


    Indices: 446--499  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        436 GCGTTTGTGG

                             * * 
        446 CTTCTTCTCGGCACTTTGCTT
          1 CTTCTTCTCGGCACTTTACCT

                                  
        467 CTTCTTCTCGGCA-TTTCACCT
          1 CTTCTTCTCGGCACTTT-ACCT

                *       
        488 CTTCATCTCGGC
          1 CTTCTTCTCGGC

        500 GCACTAATTC


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  20    3  0.10
  21   26  0.90

ACGTcount: A:0.07, C:0.37, G:0.13, T:0.43


Consensus pattern (21 bp):   
CTTCTTCTCGGCACTTTACCT

Found at i:3469 original size:20 final size:21

Alignment explanation


    Indices: 3446--3488  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       3436 ATCTTGAAGA

                                 
       3446 ATTTAAAG-CCATCGGAGATC
          1 ATTTAAAGCCCATCGGAGATC

                *        *       
       3466 ATTTGAAGCCCATTGGAGATC
          1 ATTTAAAGCCCATCGGAGATC

              
       3487 AT
          1 AT

       3489 CAACAAAGGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  20    7  0.35
  21   13  0.65

ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28


Consensus pattern (21 bp):   
ATTTAAAGCCCATCGGAGATC

Done.