Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014802.1 Corchorus olitorius cultivar O-4 contig14835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66053

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2022--2088
34
2.0
34
85
5
91
40
19
14
25
1.90
2115--2207
33
2.8
33
86
1
123
39
20
15
24
1.91
9828--9864
2
18.5
2
94
0
65
45
0
2
51
1.15
10170--10217
19
2.5
18
80
12
51
29
4
8
58
1.46
14833--14892
2
30.0
2
83
6
77
50
0
6
43
1.28
14861--14908
21
2.3
21
85
0
60
54
0
2
43
1.12
23454--23492
13
3.1
13
81
3
53
89
7
2
0
0.56
23458--23496
18
2.1
18
90
4
60
84
10
5
0
0.76
24041--24079
2
20.0
2
89
5
62
53
0
0
46
1.00
26422--26455
17
2.0
17
100
0
68
17
11
5
64
1.45
31370--31465
47
2.0
48
97
2
185
38
14
12
34
1.84
31455--31483
2
14.5
2
100
0
58
51
0
0
48
1.00
31721--31763
17
2.6
16
82
10
50
23
23
18
34
1.96
32826--32908
22
3.8
21
76
17
73
59
1
1
38
1.13
38500--38597
3
33.3
3
84
15
134
67
0
0
32
0.91
40216--40253
20
1.9
19
89
5
58
44
0
2
52
1.14
40367--40495
60
2.2
60
81
5
145
36
17
17
27
1.93
40782--40993
22
9.5
22
71
8
88
39
12
15
32
1.85
41025--41073
22
2.2
23
85
10
66
40
2
26
30
1.67
41219--41363
22
6.6
22
74
3
121
34
12
15
37
1.86
41219--41363
66
2.2
66
81
2
166
34
12
15
37
1.86
41944--42093
78
1.9
78
93
0
255
35
14
2
48
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43704--43741
16
2.4
16
95
0
67
36
21
0
42
1.53
47411--47464
21
2.7
20
86
13
76
25
3
24
46
1.69
48532--48566
3
11.7
3
100
0
70
68
0
0
31
0.90
51580--51641
31
2.0
31
93
0
106
43
20
9
25
1.83
52884--52921
2
19.0
2
100
0
76
50
0
0
50
1.00
65814--65889
38
2.0
38
92
0
125
39
11
10
38
1.77

Tables:   1

The End!