Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014810.1 Corchorus olitorius cultivar O-4 contig14843, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21874

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
571--606
19
1.9
18
88
5
54
41
8
22
27
1.82
2876--2940
29
2.3
29
97
2
123
29
9
10
50
1.68
3801--3843
22
2.0
22
90
0
68
20
23
32
23
1.98
3876--3915
21
1.9
21
89
0
62
15
20
37
27
1.92
9611--9657
26
1.9
24
87
12
69
40
4
27
27
1.75
10273--10312
21
1.9
21
94
0
71
15
22
37
25
1.93
15343--15386
19
2.3
19
88
0
61
61
20
4
13
1.50
17606--17653
2
24.0
2
83
8
62
45
6
0
47
1.27
17606--17653
21
2.3
21
88
0
69
45
6
0
47
1.27
17999--18214
45
4.8
45
93
2
371
37
21
6
34
1.79
19167--19451
127
2.3
124
90
3
453
36
10
2
50
1.51
20221--20251
2
15.5
2
100
0
62
48
0
0
51
1.00
20603--20929
163
2.0
164
96
0
611
39
12
11
36
1.80

Tables:   1

The End!