Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014816.1 Corchorus olitorius cultivar O-4 contig14849, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7235
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27


Found at i:1984 original size:51 final size:51

Alignment explanation


    Indices: 1910--2016  Score: 137
    Period size: 51  Copynumber: 2.1  Consensus size: 51

       1900 GTTCTTCATA

                                            **         *       
       1910 TTTT-TCTTGTTTAGATCTTGTCTCAGGACATTCAAACACTCTTTTAGTGT
          1 TTTTCTCTTGTTTAGATCTTGTCTCAGGACATAAAAACACTCTATTAGTGT

                                      *               *    *    
       1960 TTTTCTCTTGTTTCA-ATCTTGTCTCCGGACATAAAAACACTGTATTCGTGT
          1 TTTTCTCTTGTTT-AGATCTTGTCTCAGGACATAAAAACACTCTATTAGTGT

                  
       2011 TTTTCT
          1 TTTTCT

       2017 TTCAGAAATA


Statistics
Matches: 49,  Mismatches: 6, Indels: 3
        0.84            0.10        0.05

Matches are distributed among these distances:
  50    4  0.08
  51   44  0.90
  52    1  0.02

ACGTcount: A:0.20, C:0.20, G:0.13, T:0.48


Consensus pattern (51 bp):   
TTTTCTCTTGTTTAGATCTTGTCTCAGGACATAAAAACACTCTATTAGTGT

Found at i:6777 original size:13 final size:13

Alignment explanation


    Indices: 6759--6784  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       6749 CTTGGCATGA

                         
       6759 GTGATGATTTTTG
          1 GTGATGATTTTTG

                         
       6772 GTGATGATTTTTG
          1 GTGATGATTTTTG

       6785 TTGAGATCTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54


Consensus pattern (13 bp):   
GTGATGATTTTTG
Done.