Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014819.1 Corchorus olitorius cultivar O-4 contig14852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41581

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180--238
29
2.0
29
81
12
68
28
6
28
35
1.83
766--819
19
2.6
21
77
19
60
38
3
18
38
1.69
4565--4726
37
4.4
37
77
9
186
17
35
18
28
1.94
5760--5811
23
2.2
24
93
3
88
13
13
25
48
1.79
7595--7633
20
2.0
20
94
0
69
20
12
30
35
1.90
12594--12801
110
1.9
107
81
8
247
38
8
14
38
1.77
19942--19984
22
2.0
22
86
9
61
16
18
4
60
1.52
20100--20135
17
2.1
17
94
0
63
30
22
16
30
1.96
21971--22019
25
2.0
25
95
0
89
12
30
20
36
1.89
23002--23042
21
2.0
21
90
0
64
24
4
0
70
1.06
23090--23127
11
3.4
11
85
7
58
13
7
0
78
0.94
28048--28186
64
2.2
65
97
1
262
10
12
25
51
1.72
30428--30455
2
14.0
2
100
0
56
50
0
50
0
1.00
30445--30729
147
1.9
147
100
0
570
31
17
20
30
1.96

Tables:   1

The End!