genome.fa.s14823.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014823.1 Corchorus olitorius cultivar O-4 contig14856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138161

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1732--1779	25	1.9	25	95	0	87	37	12	16	33	1.86
2615--2675	3	20.3	3	100	0	122	32	0	0	67	0.91
3888--3995	22	5.0	21	72	14	67	37	9	17	35	1.82
3934--4059	22	5.7	22	73	9	96	38	10	12	38	1.78
3934--4059	44	2.9	43	77	9	121	38	10	12	38	1.78
5301--5508	34	6.6	31	79	15	207	36	16	15	31	1.90
5300--5513	62	3.4	62	90	5	308	36	17	15	30	1.91
23209--23302	45	2.2	42	86	7	127	35	4	20	40	1.72
27802--27857	23	2.4	24	76	5	62	46	14	10	28	1.78
27805--28044	22	10.9	22	70	8	94	38	16	10	34	1.83
27805--27948	66	2.2	66	82	6	173	38	13	11	37	1.80
27833--28044	44	4.9	43	74	5	131	38	16	10	34	1.83
28064--28128	22	3.0	20	80	14	60	30	21	4	43	1.73
28086--28128	22	1.9	23	90	4	70	32	25	2	39	1.69
28109--28150	22	1.9	22	85	0	57	26	21	7	45	1.77
28160--28285	22	5.6	23	72	11	75	34	17	8	38	1.81
28181--28372	22	8.7	22	69	15	101	34	11	11	42	1.77
28175--28302	44	2.9	44	77	14	129	32	14	9	42	1.78
29863--29890	13	2.2	13	100	0	56	53	0	21	25	1.46
29829--30249	213	2.0	213	99	0	824	35	10	16	37	1.83
31249--31285	12	3.1	12	100	0	74	24	24	8	43	1.81
32222--32248	6	4.5	6	100	0	54	14	0	51	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39936--40017	32	2.6	32	82	3	103	24	34	13	28	1.93
39935--40161	29	7.7	29	73	12	155	26	29	11	31	1.92
40044--40166	61	2.0	61	84	3	158	26	26	11	35	1.90
46939--47007	22	3.2	22	77	2	68	43	13	7	36	1.71
46947--47029	43	1.9	43	82	0	103	43	13	8	34	1.74
48600--48644	20	2.1	22	88	8	67	42	26	6	24	1.79
58019--58107	25	3.6	25	83	3	108	23	32	24	19	1.97
64971--65019	19	2.6	19	96	0	89	18	32	30	18	1.95
70670--70723	21	2.6	21	77	8	56	50	5	9	35	1.58
76959--77008	25	2.0	25	92	0	82	54	18	6	22	1.65
85754--85778	13	1.9	13	100	0	50	56	8	24	12	1.62
90454--90478	12	2.1	12	100	0	50	32	8	20	40	1.81
91254--91329	38	2.0	39	94	2	136	35	25	2	36	1.70
94639--94738	28	3.4	30	82	9	125	43	9	16	32	1.79
96138--96260	22	5.6	22	76	14	92	38	14	13	33	1.86
96138--96260	44	2.8	44	85	2	149	38	14	13	33	1.86
96415--96484	22	3.2	23	84	11	85	35	21	5	37	1.77
96507--96565	22	2.7	22	81	0	73	33	15	6	44	1.73
96507--96632	44	2.8	45	80	4	132	30	12	11	45	1.78
96560--96632	22	3.3	22	62	0	56	27	9	15	47	1.76
97805--97938	63	2.0	67	88	9	204	26	21	10	41	1.86
98415--98520	52	2.0	52	98	0	203	33	19	17	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99307--99359	25	2.0	25	85	7	70	45	5	11	37	1.64
106982--107018	2	18.5	2	100	0	74	51	0	48	0	1.00
121829--121889	29	2.1	30	87	3	88	42	3	3	50	1.34
122167--122192	13	2.0	13	100	0	52	0	7	0	92	0.39
123909--123983	35	2.1	35	82	0	87	28	17	16	38	1.91
124013--124054	14	3.0	14	86	6	50	52	0	0	47	1.00
124009--124054	18	2.6	17	86	10	65	50	0	0	50	1.00
124103--124144	15	3.1	14	87	12	61	50	0	0	50	1.00
124783--124895	2	61.0	2	69	20	59	46	0	1	51	1.17
124772--124895	24	5.2	24	73	16	82	45	0	2	50	1.20
124822--124895	35	2.1	35	85	5	96	48	0	1	50	1.09
124748--124929	92	2.1	85	87	7	256	46	1	2	48	1.26
127638--127708	36	2.0	36	94	2	126	49	15	5	29	1.67
127777--127891	56	2.0	57	96	1	214	40	1	25	33	1.66
136184--136222	20	2.0	20	85	10	53	28	5	2	64	1.28
136414--136623	22	9.5	21	71	9	123	35	9	19	35	1.84
136423--136596	66	2.6	66	83	7	208	35	9	19	35	1.85
136628--137066	22	19.9	22	68	14	145	38	9	16	35	1.81
136717--136773	20	2.7	21	81	8	80	35	8	14	42	1.76
136846--136910	25	2.8	24	84	11	82	40	9	16	33	1.81
137163--137455	22	13.5	21	66	16	93	40	8	14	36	1.77
137186--137327	44	3.2	44	76	15	116	42	8	14	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137354--137411	23	2.5	23	94	0	98	39	5	13	41	1.67
137558--137600	22	2.0	22	85	0	59	30	13	20	34	1.92
137597--137644	21	2.2	22	85	3	62	52	4	14	29	1.60
137670--137717	22	2.2	22	81	7	53	50	8	14	27	1.71

Tables:   1

The End!