Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014828.1 Corchorus olitorius cultivar O-4 contig14861, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142383

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6262--6333
37
1.9
37
97
0
135
30
19
18
31
1.95
13957--14005
6
7.7
6
78
13
53
57
40
0
2
1.10
14139--14185
21
2.2
21
84
0
58
4
44
2
48
1.34
14161--14201
15
3.0
14
86
13
59
0
43
7
48
1.30
14147--14201
27
2.0
27
86
6
76
1
43
5
49
1.36
17037--17451
135
3.1
135
96
0
776
40
18
12
28
1.87
23602--23631
8
3.8
8
100
0
60
0
10
0
90
0.47
23596--23631
16
2.1
18
90
10
58
0
13
0
86
0.58
23596--23634
18
2.2
18
86
9
53
0
15
0
84
0.62
23847--23919
36
2.0
36
97
0
137
26
13
34
26
1.93
24749--24779
6
5.2
6
100
0
62
48
16
16
19
1.81
32988--33012
12
2.1
12
100
0
50
0
8
0
92
0.40
32990--33014
13
1.9
13
100
0
50
0
8
0
92
0.40
58300--58385
43
2.0
43
100
0
172
32
2
23
41
1.67
58445--58612
86
2.0
86
95
0
300
27
11
20
39
1.87
70260--70303
22
2.0
22
90
0
70
45
27
4
22
1.72
70260--70314
22
2.5
22
85
5
58
49
25
3
21
1.66
71464--71520
25
2.4
24
88
5
80
31
5
3
59
1.36
86152--86178
1
27.0
1
100
0
54
0
0
100
0
0.00
88093--88533
218
2.0
218
99
0
873
32
21
17
29
1.95
91096--91142
19
2.3
20
79
17
53
0
40
2
57
1.11
91293--91334
12
3.5
12
81
12
50
0
33
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91924--92347
150
2.8
152
86
5
601
21
33
10
34
1.88
93871--93962
28
3.0
30
81
15
84
14
14
23
47
1.80
95096--95156
23
2.7
22
80
5
68
40
9
6
42
1.64
95096--95253
22
7.1
22
70
9
90
39
13
6
40
1.70
95180--95253
23
3.3
23
77
7
73
36
17
5
40
1.73
95522--95663
49
3.0
47
82
9
169
50
5
16
27
1.67
96940--96968
9
3.3
9
95
4
51
34
20
0
44
1.52
114741--114818
38
2.1
38
97
0
147
41
19
11
28
1.86
122622--122799
92
1.9
92
86
2
250
35
11
19
33
1.88
124228--125053
318
2.6
314
84
4
1034
21
25
13
39
1.90
133731--133763
15
2.2
15
100
0
66
69
0
24
6
1.10
134077--134182
33
3.2
33
89
4
144
3
34
41
19
1.70
134292--134342
19
2.8
18
93
3
84
37
0
9
52
1.34
134271--134324
27
2.0
26
85
3
72
31
0
11
57
1.34
134303--134360
26
2.3
26
82
11
75
37
0
10
51
1.36
134620--134687
27
2.5
27
92
4
102
19
14
47
19
1.83
134620--134676
27
2.1
27
100
0
114
19
14
45
21
1.85
136714--136754
10
4.1
10
80
0
55
17
2
21
58
1.50
136717--136755
20
2.0
20
94
0
69
15
2
17
64
1.41

Tables:   1

The End!