Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014829.1 Corchorus olitorius cultivar O-4 contig14862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46102

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
881--927
22
2.1
22
100
0
94
40
17
8
34
1.79
17227--17252
1
26.0
1
100
0
52
0
0
0
100
0.00
24790--24819
5
5.8
5
92
7
51
0
0
16
83
0.65
30165--30211
2
25.5
2
79
16
57
53
0
0
46
1.00
30171--30211
9
4.7
9
84
6
57
53
0
0
46
1.00
30983--31024
3
14.7
3
81
18
54
61
0
0
38
0.96
30985--31027
8
5.5
8
84
15
63
62
0
0
37
0.95
30983--31021
13
3.0
13
92
7
62
61
0
0
38
0.96
32998--33040
3
14.3
3
80
9
52
32
0
4
62
1.15
32950--33015
34
1.9
35
90
3
107
42
4
7
45
1.53
32966--33040
23
3.3
23
73
10
66
36
1
6
56
1.34
33301--33408
31
3.5
31
72
14
107
35
20
18
25
1.95
33450--33613
31
5.5
29
66
17
86
26
19
18
35
1.95
33448--33609
60
2.7
60
90
4
240
25
19
18
36
1.94
37833--37887
29
1.9
28
85
3
74
23
23
7
45
1.78
39878--39932
29
1.9
28
88
3
83
18
5
30
45
1.72
42764--42909
47
3.1
47
96
1
265
43
10
32
14
1.79

Tables:   1

The End!