Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014830.1 Corchorus olitorius cultivar O-4 contig14863, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6888
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:2591 original size:16 final size:16

Alignment explanation


    Indices: 2567--2598  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       2557 ATTCAACGTC

                *           
       2567 ACAATACTTTCACATT
          1 ACAACACTTTCACATT

                            
       2583 ACAACACTTTCACATT
          1 ACAACACTTTCACATT

       2599 GCTGATCTAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34


Consensus pattern (16 bp):   
ACAACACTTTCACATT

Found at i:5257 original size:27 final size:27

Alignment explanation


    Indices: 5216--5267  Score: 95
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       5206 AGTTTCGACA

                                       
       5216 TCAGGAAGTTCGGCAAGAGGTTGGAAT
          1 TCAGGAAGTTCGGCAAGAGGTTGGAAT

                      *              
       5243 TCAGGAAGTTGGGCAAGAGGTTGGA
          1 TCAGGAAGTTCGGCAAGAGGTTGGA

       5268 TTTCGGGCCA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.29, C:0.10, G:0.40, T:0.21


Consensus pattern (27 bp):   
TCAGGAAGTTCGGCAAGAGGTTGGAAT
Done.