Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014837.1 Corchorus olitorius cultivar O-4 contig14870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3668
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:3614 original size:22 final size:23

Alignment explanation


    Indices: 3589--3645  Score: 62
    Period size: 22  Copynumber: 2.5  Consensus size: 23

       3579 ATGACTTGAA

                      *            
       3589 TTTAAAATTTCTATAATTAAT-T
          1 TTTAAAATTTATATAATTAATAT

                *       *     *    
       3611 TTTATAATTTATTTAATTTATAT
          1 TTTAAAATTTATATAATTAATAT

                        
       3634 TTTAAATATTTA
          1 TTTAAA-ATTTA

       3646 ATTCAACACG


Statistics
Matches: 28,  Mismatches: 5, Indels: 2
        0.80            0.14        0.06

Matches are distributed among these distances:
  22   17  0.61
  23    6  0.21
  24    5  0.18

ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60


Consensus pattern (23 bp):   
TTTAAAATTTATATAATTAATAT
Done.