Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014838.1 Corchorus olitorius cultivar O-4 contig14871, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2167
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.28


Found at i:1044 original size:27 final size:26

Alignment explanation


    Indices: 965--1050  Score: 66
    Period size: 27  Copynumber: 3.2  Consensus size: 26

        955 ACCAATTCTA

                     *        *          
        965 GGGTAAAATGGTAATTTCCTCATTAT-AG
          1 GGGTAAAATAGTAATTT-ATCA--ATCAG

                     *                
        993 GGGTAAAATCGTAATTTATCAATCAG
          1 GGGTAAAATAGTAATTTATCAATCAG

                  *           *  *    *
       1019 GGGTAATATAGTCAATTTGTCCATCAC
          1 GGGTAAAATAGT-AATTTATCAATCAG

                 
       1046 GGGTA
          1 GGGTA

       1051 TTTTGGTAAT


Statistics
Matches: 49,  Mismatches: 7, Indels: 5
        0.80            0.11        0.08

Matches are distributed among these distances:
  25    2  0.04
  26   12  0.24
  27   19  0.39
  28   16  0.33

ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33


Consensus pattern (26 bp):   
GGGTAAAATAGTAATTTATCAATCAG
Done.