Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014840.1 Corchorus olitorius cultivar O-4 contig14873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116525

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2735--2763
2
14.5
2
100
0
58
48
0
0
51
1.00
17741--17896
29
5.4
29
86
0
231
41
23
16
18
1.89
17741--17903
58
2.8
58
92
0
272
40
23
17
18
1.91
32602--32639
16
2.4
16
86
0
58
39
5
15
39
1.70
37279--37316
16
2.4
16
86
0
58
39
5
15
39
1.70
56995--57048
19
2.6
21
77
19
60
38
18
3
38
1.69
59565--59608
19
2.2
21
84
8
56
47
11
0
40
1.39
59562--59610
21
2.3
22
75
10
57
46
12
0
40
1.41
60504--60542
20
2.0
20
94
0
69
56
5
0
38
1.22
60671--60700
15
2.0
15
93
0
51
0
36
46
16
1.47
60632--60746
54
2.1
54
81
0
131
11
31
39
18
1.86
60905--60947
18
2.5
17
82
14
52
46
0
20
32
1.51
63902--64089
94
2.0
93
95
3
342
42
10
5
42
1.61
70277--70346
36
1.9
36
88
0
104
22
10
8
58
1.57
71342--71388
25
1.9
24
95
4
85
55
8
6
29
1.55
71379--71459
39
2.0
40
92
2
137
38
2
7
51
1.43
71384--71453
22
3.4
21
66
20
58
38
1
8
51
1.41
71391--71453
18
3.1
22
63
27
57
38
1
7
52
1.40
71698--71778
39
2.0
40
88
2
119
37
4
7
50
1.52
72069--72100
2
16.0
2
100
0
64
50
0
0
50
1.00
75301--75356
18
3.1
18
75
15
53
62
1
30
5
1.28
76184--76221
19
2.0
20
89
5
60
55
18
0
26
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77054--77194
25
5.6
25
93
0
210
29
30
20
19
1.97
79127--79172
21
2.2
22
85
11
62
34
10
8
45
1.70
86777--86810
2
17.0
2
100
0
68
50
0
0
50
1.00
88587--88634
12
3.9
12
86
2
69
33
12
27
27
1.92
88580--88634
25
2.2
24
87
3
83
32
12
23
30
1.92
89628--89673
10
4.6
10
94
0
83
30
10
21
36
1.88
103424--103455
12
2.8
11
90
9
55
53
0
46
0
1.00
106032--106058
1
27.0
1
100
0
54
100
0
0
0
0.00

Tables:   1

The End!