Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014843.1 Corchorus olitorius cultivar O-4 contig14876, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65793

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
233--299
34
2.0
34
84
0
89
40
4
4
50
1.43
939--965
14
1.9
14
100
0
54
51
18
7
22
1.70
2972--3265
141
2.1
141
87
1
419
34
21
13
30
1.92
5031--5055
12
2.1
12
100
0
50
0
8
0
92
0.40
5732--5772
21
2.0
21
90
9
66
48
9
2
39
1.49
6635--6690
26
2.2
26
87
3
78
53
3
10
32
1.53
8468--8517
20
2.5
19
90
6
73
60
6
0
34
1.21
8557--8581
13
1.9
13
100
0
50
32
0
0
68
0.90
10686--10765
2
40.0
2
100
0
160
50
50
0
0
1.00
22799--22942
18
8.4
18
77
17
146
46
21
26
5
1.73
22799--22942
36
4.2
36
76
16
162
46
21
26
5
1.73
22817--22975
65
2.5
64
89
4
239
47
20
26
5
1.72
23077--23115
13
2.9
13
84
3
51
38
28
12
20
1.89
23182--23206
13
1.9
13
100
0
50
24
12
40
24
1.88
23175--23270
49
2.0
49
82
0
120
27
17
32
22
1.97
23108--23277
77
2.2
78
75
12
170
27
17
32
22
1.97
31208--31266
28
2.1
28
100
0
118
22
23
15
38
1.92
36483--37183
351
2.0
352
89
2
1070
30
17
16
34
1.93
37752--37787
17
2.1
17
100
0
72
38
25
5
30
1.78
39281--39320
19
2.0
21
85
9
57
35
2
0
62
1.09
39274--39328
27
1.9
30
89
10
89
36
1
0
61
1.06
39614--39741
65
2.0
65
93
0
220
34
8
19
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40580--40620
17
2.4
17
92
8
66
17
9
4
68
1.35
41732--41800
29
2.3
30
82
2
86
18
28
14
37
1.91
44750--44807
2
29.0
2
100
0
116
50
50
0
0
1.00
44807--44835
2
14.5
2
100
0
58
51
0
0
48
1.00
49676--49749
22
3.4
22
81
1
78
39
5
14
40
1.69
51659--51708
27
2.0
27
84
11
70
44
0
0
56
0.99
51673--51759
40
2.1
41
81
10
108
47
2
1
49
1.21
52459--52516
28
2.1
28
87
6
82
51
0
5
43
1.24
59486--59526
21
2.0
21
90
0
64
4
17
29
48
1.67
59491--59533
21
2.0
21
86
0
59
6
16
30
46
1.73

Tables:   1

The End!