Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014846.1 Corchorus olitorius cultivar O-4 contig14879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14409

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4119--4450
163
2.0
166
89
6
508
37
11
10
40
1.76
4935--4971
11
3.3
11
92
3
56
45
0
0
54
1.00
4935--4971
6
6.5
6
81
12
51
45
0
0
54
1.00
4936--4969
17
2.1
16
88
5
50
44
0
0
55
0.99
6751--6776
5
5.2
5
100
0
52
80
0
0
19
0.71
7444--7514
22
3.2
22
77
0
61
40
7
15
36
1.74
7575--8167
22
26.6
22
67
14
130
38
8
16
35
1.80
7569--8106
22
24.1
22
68
13
194
38
8
18
34
1.81
7569--7657
46
1.9
46
84
4
117
37
8
19
34
1.83
7616--7743
67
1.9
67
85
3
177
42
8
21
28
1.82
7658--7859
111
1.8
111
79
2
235
40
7
19
32
1.80
7979--8035
21
2.7
21
83
2
69
40
3
15
40
1.65
7958--8106
65
2.3
66
83
5
187
38
7
16
37
1.77
7959--8167
44
4.8
44
76
4
156
40
7
13
38
1.74
9145--9181
17
2.1
18
95
5
67
24
5
24
45
1.74
13746--14036
37
8.0
37
82
11
327
28
15
17
38
1.90
13740--13995
72
3.5
72
93
2
424
28
17
16
37
1.91

Tables:   1

The End!