Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014847.1 Corchorus olitorius cultivar O-4 contig14880, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4337
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29


Found at i:2247 original size:51 final size:50

Alignment explanation


    Indices: 2146--2247  Score: 125
    Period size: 51  Copynumber: 2.0  Consensus size: 50

       2136 GTTCATCAAA

                                                     * **     
       2146 TTTTCCTTGTTTAAATCTTGTCTCAGGACAAACAAACACTCTTTTAGTGT
          1 TTTTCCTTGTTTAAATCTTGTCTCAGGACAAACAAACACTCGTACAGTGT

                         *           *     *                    
       2196 TTTTCTCTTGTTTCAATCTTGTCTCCGGACATACAAACACT-GTACACGTGT
          1 TTTTC-CTTGTTTAAATCTTGTCTCAGGACAAACAAACACTCGTACA-GTGT

             
       2247 T
          1 T

       2248 CTTCATTCAG


Statistics
Matches: 44,  Mismatches: 6, Indels: 3
        0.83            0.11        0.06

Matches are distributed among these distances:
  50    7  0.16
  51   37  0.84

ACGTcount: A:0.24, C:0.23, G:0.13, T:0.41


Consensus pattern (50 bp):   
TTTTCCTTGTTTAAATCTTGTCTCAGGACAAACAAACACTCGTACAGTGT
Done.