Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014848.1 Corchorus olitorius cultivar O-4 contig14881, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4365
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26


Found at i:830 original size:16 final size:15

Alignment explanation


    Indices: 792--833  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        782 ACAGAGATTG

                   *    *  
        792 ACAGAAAGCAATTAA
          1 ACAGAAAACAATGAA

                           
        807 ACAGAAAACAATGAA
          1 ACAGAAAACAATGAA

                        
        822 ACTAGAAAACAA
          1 AC-AGAAAACAA

        834 AGCAGAGTAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  15   15  0.62
  16    9  0.38

ACGTcount: A:0.64, C:0.14, G:0.12, T:0.10


Consensus pattern (15 bp):   
ACAGAAAACAATGAA
Done.