Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014851.1 Corchorus olitorius cultivar O-4 contig14884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54228

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3136--3192
28
2.0
28
100
0
114
22
17
17
42
1.89
3373--3407
14
2.5
14
90
0
61
62
11
2
22
1.41
10721--10753
16
2.1
16
100
0
66
33
6
24
36
1.80
20534--20574
21
2.0
21
85
0
55
39
24
9
26
1.86
23416--23474
4
14.8
4
100
0
118
76
0
0
23
0.79
23663--23715
29
1.9
28
88
11
83
24
26
15
33
1.95
28996--29044
25
2.0
25
91
0
80
12
28
20
38
1.89
29041--29082
21
2.0
21
86
9
59
47
35
0
16
1.47
34668--34784
56
2.1
56
90
0
189
41
11
12
34
1.79
34823--34975
41
3.8
41
83
6
179
32
13
16
37
1.87
35767--35812
2
26.0
2
76
24
50
45
0
0
54
0.99
35768--35812
11
3.8
13
75
24
55
44
0
0
55
0.99
36037--36109
36
2.0
36
94
0
128
13
36
0
49
1.43
43979--44012
2
16.5
2
93
6
59
47
0
2
50
1.16
45161--45196
3
12.0
3
100
0
72
33
66
0
0
0.92
48745--48779
2
17.5
2
100
0
70
48
0
0
51
1.00
50366--50394
9
3.3
9
95
4
51
48
6
0
44
1.29
51027--51118
2
44.5
2
85
14
125
48
5
0
45
1.25
51019--51118
47
2.1
50
90
9
163
49
6
0
45
1.27
51018--51119
51
1.9
55
86
11
151
50
5
0
44
1.26
52902--52930
12
2.3
13
94
5
51
0
37
0
62
0.96

Tables:   1

The End!