Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014856.1 Corchorus olitorius cultivar O-4 contig14889, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2529
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33


Found at i:716 original size:21 final size:22

Alignment explanation


    Indices: 676--716  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        666 GATAAACTCG

                           *      
        676 TAACCCGAATAACCCGAGAAGA
          1 TAACCCGAATAACCCAAGAAGA

                      *         
        698 TAACCC-AATGACCCAAGAA
          1 TAACCCGAATAACCCAAGAA

        717 TATTATAAAC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   11  0.65
  22    6  0.35

ACGTcount: A:0.46, C:0.29, G:0.15, T:0.10


Consensus pattern (22 bp):   
TAACCCGAATAACCCAAGAAGA
Done.