Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014860.1 Corchorus olitorius cultivar O-4 contig14893, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9702
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:4997 original size:1 final size:1

Alignment explanation


    Indices: 4991--5018  Score: 56
    Period size: 1  Copynumber: 28.0  Consensus size: 1

       4981 TAACAAAGTT

                                        
       4991 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA

       5019 GATGTTTAAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   27  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:8925 original size:24 final size:24

Alignment explanation


    Indices: 8893--8942  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       8883 TAATCGTTTC

                                    
       8893 ATGTGTAATTATATATTAAATCTA
          1 ATGTGTAATTATATATTAAATCTA

                                    
       8917 ATGTGTAATTATATATTAAATCTA
          1 ATGTGTAATTATATATTAAATCTA

              
       8941 AT
          1 AT

       8943 TCGCCCTGAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46


Consensus pattern (24 bp):   
ATGTGTAATTATATATTAAATCTA

Found at i:9441 original size:2 final size:2

Alignment explanation


    Indices: 9434--9459  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       9424 ATCTACCATA

                                                  
       9434 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

       9460 TCAATATAAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.