genome.fa.s14862.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014862.1 Corchorus olitorius cultivar O-4 contig14895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125552

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653--713	24	2.5	25	81	7	72	9	18	29	42	1.82
813--862	18	2.8	18	87	0	82	44	30	2	24	1.65
3024--3054	13	2.4	13	94	0	53	54	12	0	32	1.38
4329--4414	12	7.2	12	79	0	100	16	31	4	47	1.67
4331--4414	24	3.5	24	95	0	141	16	30	4	47	1.67
4563--4608	24	1.9	24	91	8	76	26	23	0	50	1.50
4563--4621	24	2.5	24	83	8	75	28	23	1	45	1.63
6971--6999	7	4.1	7	100	0	58	17	27	27	27	1.97
18160--18201	14	3.1	14	93	6	70	45	19	14	21	1.85
20453--20549	45	2.2	45	88	1	142	37	5	22	35	1.77
28419--28451	1	33.0	1	100	0	66	100	0	0	0	0.00
43094--43139	3	15.3	3	100	0	92	67	0	0	32	0.91
48272--48459	102	1.9	101	98	1	367	26	13	26	33	1.93
49431--49699	134	2.0	134	89	2	407	38	8	2	50	1.48
50710--50739	15	1.9	16	93	6	53	40	6	6	46	1.56
51233--51293	29	2.1	30	90	3	97	52	3	1	42	1.27
57261--57295	14	2.6	14	90	4	54	57	5	0	37	1.23
57567--57703	31	4.5	30	81	7	134	39	11	16	32	1.85
57822--57888	31	2.2	29	89	5	98	22	19	10	47	1.79
61954--62037	36	2.3	37	93	4	152	57	8	3	30	1.46
62538--62614	28	2.7	30	82	11	99	37	11	18	32	1.87
70474--70591	28	4.2	28	80	7	125	39	26	16	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70500--70591	27	3.3	27	83	7	105	41	26	15	17	1.88
74664--74704	21	2.0	21	85	0	55	63	0	24	12	1.28
79154--79209	28	2.0	29	82	10	71	66	0	25	8	1.21
95582--95694	21	5.4	21	90	2	174	29	17	25	27	1.98
96289--96335	26	1.9	24	87	12	69	27	27	4	40	1.75
97778--97915	33	4.2	33	79	5	120	27	7	21	44	1.78
99718--99809	21	4.4	21	91	2	141	27	19	26	27	1.99
103494--103519	11	2.4	11	100	0	52	69	7	15	7	1.35
105740--105782	14	2.9	15	72	6	52	60	4	16	18	1.52
112339--112374	4	9.0	4	100	0	72	50	0	0	50	1.00
112719--112783	29	2.2	31	88	5	98	35	9	20	35	1.84
113841--113875	2	17.5	2	100	0	70	48	0	0	51	1.00
116420--116461	18	2.3	18	100	0	84	38	35	19	7	1.79
119840--119892	23	2.3	23	86	0	79	37	13	7	41	1.72
119984--120036	23	2.3	23	90	0	88	37	11	7	43	1.69
120056--120088	12	2.8	12	95	4	59	45	9	0	45	1.35
124147--124200	19	2.6	21	77	19	60	38	18	3	38	1.69

Tables:   1

The End!