Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014868.1 Corchorus olitorius cultivar O-4 contig14901, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6912
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:4251 original size:26 final size:26

Alignment explanation


    Indices: 4207--4256  Score: 64
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       4197 ATGATTTAGG

                      *   *           
       4207 GGTTACTAACTCCCTTTTTCTTTTGA
          1 GGTTACTAACGCCCGTTTTCTTTTGA

                        *      *    
       4233 GGTTACTAACGCTCGTTTTTTTTT
          1 GGTTACTAACGCCCGTTTTCTTTT

       4257 CAGAGGGACA


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  26   20  1.00

ACGTcount: A:0.14, C:0.20, G:0.14, T:0.52


Consensus pattern (26 bp):   
GGTTACTAACGCCCGTTTTCTTTTGA
Done.