Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014870.1 Corchorus olitorius cultivar O-4 contig14903, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6296
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:1077 original size:11 final size:11

Alignment explanation


    Indices: 1061--1086  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       1051 AGATAATTTC

                       
       1061 TTTTCTTCTAG
          1 TTTTCTTCTAG

                       
       1072 TTTTCTTCTAG
          1 TTTTCTTCTAG

                
       1083 TTTT
          1 TTTT

       1087 TAGGCAAAGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69


Consensus pattern (11 bp):   
TTTTCTTCTAG

Found at i:1875 original size:15 final size:16

Alignment explanation


    Indices: 1846--1885  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       1836 TTACTTTGCT

                            
       1846 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
       1862 TTGTTTTC-AGTTTAA
          1 TTGTTTTCTAGTTTAA

               *     
       1877 TTGCTTTCT
          1 TTGTTTTCT

       1886 GTCAATCTCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  15   14  0.64
  16    8  0.36

ACGTcount: A:0.15, C:0.10, G:0.12, T:0.62


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.